PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG046400.6.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 266aa MW: 28091.6 Da PI: 9.0852

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG046400.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.4e-06	172	217	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 a n+r r RR+++ +++ L++l+ + +K + a++L +A YI+ L Pavir.9NG046400.6.p 172 ATNKRPRVRREKLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 217 679*********************8.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.449	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-12	172	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-8	173	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.90E-5	174	222	No hit	No description
SMART	SM00353	6.3E-6	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MVKEEEIVAQ AGGRAYMDLL GLGEEDYLLC LSPSSYFSSS VVSTTTTTTS ATPAAAASPT 60 CASYLDPAPA YHHMLSFAGQ EQYHGGDVVF GFQYHGGDQA AIPVAVPQKS SPTTECSSSI 120 SSMSSSPPAT TISAISSPKP QGFKKKGSRS SDQRKAAPAA AVAHAATATG AATNKRPRVR 180 REKLGERIIA LQQLVSPFGK SDTASVLHEA LGYIRFLHDQ VQALSSPYMQ RLPASVHAPV 240 SRAGRQAKLH QCFFRSESPI GDYLR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466417.1	1e-103	hypothetical protein SORBIDRAFT_01g007440
TrEMBL	C5X062	1e-103	C5X062_SORBI; Putative uncharacterized protein Sb01g007440
STRING	Sb01g007440.1	1e-102	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	3e-22	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG046400.6.p